igvR - igvR: integrative genomics viewer

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Last updated 5 months ago

visualizationthirdpartyclientgenomebrowsers

41 stars 8.43 score 77 dependencies

igvShiny - igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

Last updated 1 months ago

softwareshinyappssequencingcoverage

36 stars 7.66 score 72 dependencies

gDRimport - Package for handling the import of dose-response data

The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

Last updated 16 days ago

softwareinfrastructuredataimport

2 stars 7.19 score 197 dependencies 1 dependents

gDRutils - A package with helper functions for processing drug response data

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Last updated 2 days ago

softwareinfrastructure

7.13 score 107 dependencies 3 dependents

gDRcore - Processing functions and interface to process and analyze drug dose-response data

This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.

Last updated 4 days ago

softwareshinyapps

1 stars 7.05 score 108 dependencies 1 dependents

gDRstyle - A package with style requirements for the gDR suite

Package fills a helper package role for whole gDR suite. It helps to support good development practices by keeping style requirements and style tests for other packages. It also contains build helpers to make all package requirements met.

Last updated 1 months ago

softwareinfrastructure

2 stars 6.35 score 87 dependencies

BrowserViz - BrowserViz: interactive R/browser graphics using websockets and JSON

Interactvive graphics in a web browser from R, using websockets and JSON.

Last updated 5 months ago

visualizationthirdpartyclient

2 stars 6.23 score 10 dependencies 2 dependents

gDR - Umbrella package for R packages in the gDR suite

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Last updated 4 months ago

softwaredataimportshinyapps

1 stars 5.60 score 199 dependencies